STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2396KEGG: cce:Ccel_3359 hypothetical protein. (171 aa)    
Predicted Functional Partners:
Cpap_3326
PFAM: extracellular solute-binding protein family 1; KEGG: cce:Ccel_1252 extracellular solute-binding protein family 1.
  
     0.664
Cpap_2964
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1937 copper amine oxidase domain protein.
  
     0.654
Cpap_1929
KEGG: bcg:BCG9842_B3621 hypothetical protein.
  
     0.641
Cpap_2616
KEGG: cce:Ccel_2510 protein of unknown function DUF201; manually curated; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp.
  
     0.629
Cpap_3534
PFAM: S-layer domain-containing protein; KEGG: pjd:Pjdr2_1142 S-layer domain protein.
  
     0.628
Cpap_2314
KEGG: cce:Ccel_0213 hypothetical protein.
  
     0.625
Cpap_2356
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_3397 S-layer domain protein.
  
     0.608
Cpap_3325
KEGG: cce:Ccel_1251 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver.
  
     0.601
Cpap_3182
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1718 copper amine oxidase domain protein.
  
     0.591
Cpap_1931
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0275 S-layer domain protein.
  
     0.590
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.