STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2401PFAM: protein of unknown function DUF951; KEGG: cce:Ccel_3354 protein of unknown function DUF951. (69 aa)    
Predicted Functional Partners:
Cpap_2400
PFAM: MscS Mechanosensitive ion channel; KEGG: cce:Ccel_3355 MscS mechanosensitive ion channel.
  
    0.821
Cpap_2402
KEGG: cce:Ccel_3353 hypothetical protein.
  
    0.749
Cpap_1050
PFAM: protein of unknown function DUF448; KEGG: cce:Ccel_0455 protein of unknown function DUF448.
  
     0.731
Cpap_4207
PFAM: protein of unknown function DUF965; KEGG: cce:Ccel_2240 hypothetical protein; Belongs to the UPF0297 family.
  
     0.731
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
  
  
 0.703
Cpap_2399
PFAM: peptidase C26; KEGG: cce:Ccel_3356 peptidase C26.
       0.624
Cpap_0417
PFAM: protein of unknown function DUF633; KEGG: cce:Ccel_0543 protein of unknown function DUF633.
  
     0.615
Cpap_0223
Helix-turn-helix protein YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.564
Cpap_2151
Phosphoesterase RecJ domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.
 
     0.539
proA
Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.
   
    0.527
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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