STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2414PFAM: protein of unknown function DUF378; KEGG: cce:Ccel_3342 protein of unknown function DUF378. (71 aa)    
Predicted Functional Partners:
Cpap_2413
PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cce:Ccel_3343 small acid-soluble spore protein alpha/beta type.
 
    0.577
Cpap_1022
Hypothetical protein; KEGG: cce:Ccel_0431 putative spore-coat protein.
  
     0.482
Cpap_4018
PFAM: GerA spore germination protein; KEGG: cce:Ccel_1971 GerA spore germination protein.
  
     0.422
Cpap_2415
KEGG: cce:Ccel_3341 hypothetical protein.
       0.420
Cpap_0041
PFAM: GerA spore germination protein; KEGG: cce:Ccel_0521 GerA spore germination protein.
  
     0.409
Cpap_0109
KEGG: cth:Cthe_1021 stage IV sporulation protein A; TIGRFAM: stage IV sporulation protein A; PFAM: Sporulation stage IV protein A.
  
     0.408
Cpap_0650
RNA polymerase, sigma 28 subunit, SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.403
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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