STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2431KEGG: clj:CLJU_c16450 hypothetical protein. (69 aa)    
Predicted Functional Partners:
Cpap_2432
KEGG: aoe:Clos_2720 spore germination protein; TIGRFAM: spore germination protein; PFAM: Spore germination protein.
       0.788
Cpap_2430
KEGG: cce:Ccel_3013 germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
       0.782
Cpap_2429
PFAM: GerA spore germination protein; KEGG: cce:Ccel_3014 GerA spore germination protein.
       0.779
Cpap_2433
PFAM: major facilitator superfamily MFS_1; KEGG: pjd:Pjdr2_3040 major facilitator superfamily MFS_1.
       0.561
Cpap_2434
KEGG: cce:Ccel_3335 TrkA-C domain protein; PFAM: TrkA-C domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
       0.543
Cpap_2428
PFAM: iron-containing alcohol dehydrogenase; KEGG: cce:Ccel_3337 iron-containing alcohol dehydrogenase.
       0.480
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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