STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2444KEGG: cce:Ccel_3327 hypothetical protein. (478 aa)    
Predicted Functional Partners:
Cpap_2445
KEGG: cce:Ccel_3326 hypothetical protein.
 
     0.836
Cpap_2747
PFAM: WD40-like beta Propeller containing protein; KEGG: bth:BT_4426 hypothetical protein.
 
     0.772
Cpap_2748
Ricin B lectin; KEGG: caa:Caka_0968 surface layer protein; PFAM: Ricin B lectin; Dockerin type 1; SMART: Ricin B lectin.
 
     0.767
Cpap_1229
PFAM: Dockerin type 1; KEGG: cce:Ccel_1655 cellulosome protein dockerin type I.
  
     0.754
Cpap_2224
PFAM: extracellular solute-binding protein family 1; KEGG: cce:Ccel_0145 extracellular solute-binding protein family 1.
  
     0.720
Cpap_0053
KEGG: cce:Ccel_2406 hypothetical protein.
 
     0.719
Cpap_1795
KEGG: cba:CLB_0788 hypothetical protein.
  
     0.718
Cpap_3316
KEGG: cce:Ccel_1244 hypothetical protein; manually curated; PFAM: glutaredoxin 2.
  
     0.711
Cpap_2221
KEGG: cce:Ccel_0142 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; histidine kinase HAMP region domain protein; SMART: Helix-turn-helix, AraC domain.
  
     0.709
Cpap_2451
TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; KEGG: cce:Ccel_3322 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase.
  
    0.700
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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