STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2450KEGG: cce:Ccel_3323 NLP/P60 protein; PFAM: NLP/P60 protein; SH3 type 3 domain protein; SMART: SH3 domain protein; SH3 domain-containing protein. (282 aa)    
Predicted Functional Partners:
Cpap_1750
KEGG: dae:Dtox_0436 S-layer domain protein; PFAM: SH3 type 3 domain protein; S-layer domain-containing protein; SMART: SH3 domain protein.
    
 0.667
Cpap_2451
TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; KEGG: cce:Ccel_3322 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase.
 
     0.658
Cpap_4142
PFAM: transposase IS605 OrfB; KEGG: cce:Ccel_2298 transposase IS605 OrfB.
  
     0.584
Cpap_2964
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1937 copper amine oxidase domain protein.
  
     0.556
Cpap_3182
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1718 copper amine oxidase domain protein.
  
     0.555
Cpap_0250
PFAM: cellulosome anchoring protein cohesin region; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: cce:Ccel_0728 cellulosome anchoring protein cohesin region.
  
     0.546
Cpap_0951
Resolvase domain; KEGG: cth:Cthe_1294 recombinase; PFAM: Resolvase domain; SMART: Resolvase domain.
  
     0.535
Cpap_2754
KEGG: cce:Ccel_2393 S-layer domain protein; PFAM: copper amine oxidase-like domain-containing protein; SMART: Parallel beta-helix repeat.
  
     0.530
Cpap_2607
KEGG: cce:Ccel_2502 hypothetical protein.
  
     0.489
cysS
SMART: Cysteinyl-tRNA synthetase class Ia DALR; TIGRFAM: cysteinyl-tRNA synthetase; KEGG: cce:Ccel_3324 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.488
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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