STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2469KEGG: cce:Ccel_3228 hypothetical protein. (323 aa)    
Predicted Functional Partners:
Cpap_2481
PFAM: glycosyl transferase group 1; Methyltransferase type 11; KEGG: cbi:CLJ_B2927 methyltransferase type 11.
   
 
 0.826
Cpap_0334
PFAM: glycosyl transferase group 1; KEGG: cce:Ccel_2930 TPR/glycosyl transferase domain-containing protein.
   
 
 0.810
Cpap_0388
KEGG: cce:Ccel_2883 polysaccharide pyruvyl transferase; TIGRFAM: polysaccharide pyruvyl transferase CsaB; PFAM: glycosyl transferase group 1.
   
 
 0.810
Cpap_3127
PFAM: glycosyl transferase group 1; Starch synthase catalytic domain-containing protein; KEGG: cce:Ccel_1773 glycosyl transferase group 1.
   
 
 0.810
Cpap_3801
PFAM: glycosyl transferase group 1; KEGG: dtu:Dtur_1622 glycosyl transferase group 1.
   
 
 0.810
Cpap_3050
PFAM: thioesterase superfamily protein; KEGG: cce:Ccel_1870 thioesterase superfamily protein.
   
 
 0.728
Cpap_4106
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding; KEGG: cce:Ccel_2331 amino acid adenylation domain protein; SMART: Polyketide synthase/Fatty acid synthase, KR.
     
 0.492
Cpap_0010
Manually curated; KEGG: cpi:Cpin_5290 erythronolide synthase, 6-methylsalicylic acid synthase; PFAM: Beta-ketoacyl synthase; KR domain protein; phosphopantetheine-binding.
    
 0.488
Cpap_1664
PFAM: regulatory protein DeoR; KEGG: cce:Ccel_0680 fatty acid biosynthesis transcriptional regulator.
     
 0.469
Cpap_2705
PFAM: thioesterase superfamily protein; KEGG: cce:Ccel_2579 thioesterase superfamily protein.
     
 0.469
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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