STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2478Glycosyl transferase family 2; KEGG: bld:BLi00807 hypothetical protein; PFAM: glycosyl transferase family 2; SMART: Tetratricopeptide repeat. (362 aa)    
Predicted Functional Partners:
Cpap_2480
PFAM: Collagen triple helix repeat-containing protein; KEGG: cbe:Cbei_2587 triple helix repeat-containing collagen.
 
     0.825
Cpap_2479
PFAM: Collagen triple helix repeat-containing protein; KEGG: bli:BL03072 hypothetical protein.
 
    0.806
Cpap_3287
PFAM: Collagen triple helix repeat-containing protein; KEGG: dhd:Dhaf_0586 collagen triple helix repeat protein.
 
     0.642
Cpap_2012
KEGG: cce:Ccel_0343 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase.
  
  
 0.634
Cpap_4179
TIGRFAM: ABC-type bacteriocin transporter; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; KEGG: cce:Ccel_2265 ABC-type bacteriocin transporter; SMART: AAA ATPase.
  
  
 0.634
Cpap_2481
PFAM: glycosyl transferase group 1; Methyltransferase type 11; KEGG: cbi:CLJ_B2927 methyltransferase type 11.
  
 
 0.555
Cpap_4106
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding; KEGG: cce:Ccel_2331 amino acid adenylation domain protein; SMART: Polyketide synthase/Fatty acid synthase, KR.
  
 0.506
Cpap_2174
Flagellar hook-associated 2 domain-containing protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.505
Cpap_0614
KEGG: cce:Ccel_2027 CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; P2 response regulator binding domain protein; Signal transducing histidine kinase homodimeric; SMART: Hpt domain protein; ATP-binding region ATPase domain protein; CheW domain protein.
   
    0.504
Cpap_4125
CheA signal transduction histidine kinase; Manually curated; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; KEGG: cce:Ccel_2315 CheA signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; Hpt domain protein; CheW domain protein.
   
    0.504
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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