STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2480PFAM: Collagen triple helix repeat-containing protein; KEGG: cbe:Cbei_2587 triple helix repeat-containing collagen. (466 aa)    
Predicted Functional Partners:
Cpap_0945
PFAM: lipolytic protein G-D-S-L family; KEGG: cce:Ccel_2162 lipolytic protein G-D-S-L family.
    
  0.831
Cpap_3849
PFAM: glycoside hydrolase family 5; Dockerin type 1; KEGG: cce:Ccel_1099 glycoside hydrolase family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
  0.831
Cpap_2478
Glycosyl transferase family 2; KEGG: bld:BLi00807 hypothetical protein; PFAM: glycosyl transferase family 2; SMART: Tetratricopeptide repeat.
 
     0.825
Cpap_2479
PFAM: Collagen triple helix repeat-containing protein; KEGG: bli:BL03072 hypothetical protein.
 
0.625
Cpap_0847
Cell division protein FtsK/SpoIIIE; KEGG: mfl:Mfl100 DNA translocase (stage III sporulation protein E); PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase.
    
 
 0.563
Cpap_1580
PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: cce:Ccel_0601 cell divisionFtsK/SpoIIIE.
    
 
 0.563
Cpap_3071
KEGG: ate:Athe_0012 YD repeat protein; TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein.
 
 0.555
Cpap_1541
Hypothetical protein; KEGG: mat:MARTH_orf653 massive surface protein MspH.
    
 
 0.552
Cpap_2407
KEGG: cce:Ccel_3349 hypothetical protein.
 
     0.531
Cpap_0275
KEGG: amt:Amet_4595 membrane protein.
  
     0.528
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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