STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2507Hypothetical protein; Manually curated; KEGG: cce:Ccel_3194 hypothetical protein. (241 aa)    
Predicted Functional Partners:
Cpap_3404
KEGG: eum:ECUMN_2310 hypothetical protein.
  
    0.633
Cpap_3987
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.585
Cpap_4211
Protein of unknown function DUF450; KEGG: rsd:TGRD_039 type I restriction-modification system restriction subunit; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase.
  
    0.585
Cpap_2285
PFAM: restriction modification system DNA specificity domain; KEGG: mfe:Mefer_0543 N-6 DNA methylase.
  
    0.535
Cpap_3984
PFAM: restriction modification system DNA specificity domain; KEGG: sbm:Shew185_2194 restriction modification system DNA specificity subunit.
  
    0.535
Cpap_4212
Hypothetical protein; KEGG: kpn:KPN_pKPN4p07085 putative restriction endonuclease S subunit.
  
    0.535
Cpap_1239
PFAM: Protein of unknown function DUF3320; KEGG: mvn:Mevan_0087 superfamily I DNA/RNA helicase.
    
  0.508
Cpap_2506
PFAM: iron-containing alcohol dehydrogenase; KEGG: bpo:BP951000_0786 iron-containing alcohol dehydrogenase.
       0.456
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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