STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2516PFAM: aminotransferase class I and II; KEGG: cce:Ccel_3185 aminotransferase class I and II. (391 aa)    
Predicted Functional Partners:
Cpap_0231
PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: clj:CLJU_c24380 cystathione gamma-synthase.
 
 
 0.953
Cpap_2515
KEGG: cce:Ccel_3186 cysteine synthase A; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.923
Cpap_2513
KEGG: cce:Ccel_3188 phosphopantothenoylcysteine decarboxylase; PFAM: flavoprotein.
    
  0.871
Cpap_2439
TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: cce:Ccel_3332 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein.
   
 0.863
Cpap_3478
PFAM: homocysteine S-methyltransferase; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: cth:Cthe_0645 methionine synthase (B12-dependent).
     
 0.858
Cpap_0740
PFAM: methylenetetrahydrofolate reductase; homocysteine S-methyltransferase; KEGG: cce:Ccel_2474 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein.
 
  
 0.852
Cpap_2929
TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: cce:Ccel_1962 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein.
   
 0.850
Cpap_3649
PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: cce:Ccel_1452 homoserine dehydrogenase.
    
 0.845
Cpap_2926
PFAM: aminotransferase class I and II; KEGG: cce:Ccel_1965 aspartate aminotransferase.
     
 0.831
Cpap_2734
TIGRFAM: aminoacyl-histidine dipeptidase; KEGG: ckr:CKR_0614 hypothetical protein; PFAM: peptidase M20; peptidase dimerisation domain protein.
 
  
 0.827
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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