STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2518TIGRFAM: seryl-tRNA synthetase; KEGG: cce:Ccel_3183 seryl-tRNA synthetase; PFAM: Seryl-tRNA synthetase, class IIa-like; tRNA synthetase class II (G H P and S). (425 aa)    
Predicted Functional Partners:
Cpap_0010
Manually curated; KEGG: cpi:Cpin_5290 erythronolide synthase, 6-methylsalicylic acid synthase; PFAM: Beta-ketoacyl synthase; KR domain protein; phosphopantetheine-binding.
   
 
 0.854
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
   
  
 0.837
Cpap_2078
Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
  
    0.834
Cpap_0003
6-deoxyerythronolide-B synthase; Manually curated; KEGG: bbe:BBR47_39870 putative mixed polyketide synthase/non-ribosomal peptide synthetase; PFAM: Beta-ketoacyl synthase; phosphopantetheine-binding.
   
 
 0.818
Cpap_3704
PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KEGG: cce:Ccel_0864 amino acid adenylation domain protein.
   
 
 0.818
Cpap_3716
KEGG: cce:Ccel_0862 beta-ketoacyl synthase; PFAM: KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding.
   
 
 0.818
Cpap_0012
PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; phosphopantetheine-binding; Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: cpi:Cpin_5296 beta-ketoacyl synthase.
   
 
 0.797
Cpap_0013
PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; phosphopantetheine-binding; short-chain dehydrogenase/reductase SDR; KEGG: mxa:MXAN_4527 polyketide synthase.
   
 
 0.797
Cpap_0280
Beta-ketoacyl-acyl-carrier-protein synthase I., 6-deoxyerythronolide-B synthase; Manually curated; KEGG: mxa:MXAN_3935 non-ribosomal peptide synthase/polyketide synthase Ta1; PFAM: Beta-ketoacyl synthase; Acyl transferase; phosphopantetheine-binding; KR domain protein.
   
 
 0.797
Cpap_2599
Acyl transferase; KEGG: ava:Ava_3986 short-chain dehydrogenase/reductase SDR; PFAM: Acyl transferase; KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding; Methyltransferase type 12; NADH:flavin oxidoreductase/NADH oxidase; SMART: Polyketide synthase, beta-ketoacyl synthase region; Polyketide synthase, acyl transferase domain; Polyketide synthase, phosphopantetheine-binding; Polyketide synthase/Fatty acid synthase, KR.
   
 
 0.797
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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