STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2521TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; iron hydrogenase small subunit; ferredoxin; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; KEGG: drm:Dred_3290 hydrogenases, Fe-only; SMART: iron hydrogenase small subunit. (592 aa)    
Predicted Functional Partners:
Cpap_2520
KEGG: drm:Dred_3291 NADH dehydrogenase (quinone); PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; NADH dehydrogenase (ubiquinone) 24 kDa subunit; Soluble ligand binding domain.
 
 0.999
Cpap_4226
KEGG: cce:Ccel_2233 respiratory-chain NADH dehydrogenase domain 51 kDa subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; NADH dehydrogenase (ubiquinone) 24 kDa subunit; Soluble ligand binding domain.
 0.999
Cpap_2811
PFAM: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; KEGG: clj:CLJU_c30250 fumarate reductase/succinate dehydrogenase flavoprotein-like protein.
 
 0.998
Cpap_4136
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; Soluble ligand binding domain; KEGG: cce:Ccel_2304 respiratory-chain NADH dehydrogenase domain 51 kDa subunit.
 0.998
Cpap_2519
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: drm:Dred_3292 NADH dehydrogenase (ubiquinone), 24 kDa subunit.
 0.994
Cpap_3220
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: cce:Ccel_1686 NADH ubiquinone oxidoreductase 20 kDa subunit.
  
 0.990
Cpap_2132
KEGG: csc:Csac_0731 FMN-binding domain-containing protein; PFAM: FMN-binding domain protein; SMART: FMN-binding domain protein.
 
 
 0.988
Cpap_2773
Hypothetical protein; KEGG: ctc:CTC00067 putative polyferredoxin.
   
 0.987
Cpap_4135
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: cce:Ccel_2305 NADH dehydrogenase (ubiquinone) 24 kDa subunit.
 0.984
Cpap_0754
KEGG: tpt:Tpet_0696 NADH dehydrogenase (quinone); PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; Soluble ligand binding domain.
 
 0.982
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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