STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2541KEGG: cce:Ccel_3098 exopolysaccharide biosynthesis protein. (385 aa)    
Predicted Functional Partners:
Cpap_2540
PFAM: Flagellar protein FlgJ-like; KEGG: cce:Ccel_3099 hypothetical protein.
       0.794
Cpap_2539
Fagellar hook-basal body protein; KEGG: cce:Ccel_3100 protein of unknown function DUF1078 domain protein; TIGRFAM: fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein.
       0.731
Cpap_2355
KEGG: cce:Ccel_3398 hypothetical protein.
  
  
  0.627
Cpap_2354
KEGG: cce:Ccel_3399 hypothetical protein.
  
  
  0.609
Cpap_2538
Fagellar hook-basal body protein; KEGG: cce:Ccel_3101 protein of unknown function DUF1078 domain protein; TIGRFAM: fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein.
       0.588
Cpap_1650
KEGG: cce:Ccel_0666 cell envelope-related transcriptional attenuator; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator.
 
     0.562
Cpap_4252
KEGG: cce:Ccel_2221 protein of unknown function DUF187; PFAM: protein of unknown function DUF187; cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin.
 
  
  0.544
fabZ
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.
       0.518
Cpap_1931
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0275 S-layer domain protein.
  
  
  0.504
Cpap_0388
KEGG: cce:Ccel_2883 polysaccharide pyruvyl transferase; TIGRFAM: polysaccharide pyruvyl transferase CsaB; PFAM: glycosyl transferase group 1.
 
     0.491
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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