STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2568Peptidoglycan-binding lysin domain; KEGG: cpy:Cphy_0789 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM. (215 aa)    
Predicted Functional Partners:
Cpap_2571
PFAM: Phage-like element PBSX protein, XkdS; KEGG: cdf:CD2901 phage protein.
 
   0.994
Cpap_2572
PFAM: Baseplate J family protein; KEGG: cdf:CD2900 putative phage tail protein.
 
 
 0.994
Cpap_2564
Phage protein; KEGG: cdl:CDR20291_1441 phage protein.
 
 
 0.975
Cpap_2570
KEGG: cpy:Cphy_2952 hypothetical protein.
 
    0.969
Cpap_2573
Hypothetical protein; Manually curated; KEGG: cpy:Cphy_2949 hypothetical protein.
 
  
 0.968
Cpap_2569
KEGG: cdf:CD2903 putative phage cell wall hydrolase.
 
    0.964
Cpap_2567
Hypothetical protein; KEGG: str:Sterm_1441 phage tape measure protein.
 
     0.962
Cpap_2566
PFAM: XkdN-like protein; KEGG: cdl:CDR20291_1444 phage protein.
 
    0.905
Cpap_2574
PFAM: Kelch repeat type 1-containing protein; KEGG: lsp:Bsph_1789 hypothetical protein.
 
     0.885
Cpap_2565
PFAM: XkdM protein, phage-like element PBSX; KEGG: cdf:CD2909 phage protein.
 
    0.846
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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