STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2591KEGG: dsy:DSY4423 hypothetical protein; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB. (451 aa)    
Predicted Functional Partners:
Cpap_1201
KEGG: fpl:Ferp_0042 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.770
Cpap_3797
KEGG: gme:Gmet_1693 radical SAM family protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.765
Cpap_3829
Radical SAM domain protein; KEGG: mxa:MXAN_4597 putative methyltransferase; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.757
Cpap_1202
KEGG: fpl:Ferp_0042 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.755
Cpap_2590
PFAM: Thioesterase; KEGG: bay:RBAM_003690 SrfAD.
       0.732
Cpap_2592
KEGG: dsy:DSY4423 hypothetical protein; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
    
0.712
Cpap_2593
PfaD family protein; KEGG: dat:HRM2_33230 putative dioxygenase; TIGRFAM: PfaD family protein; PFAM: 2-nitropropane dioxygenase NPD.
       0.602
Cpap_2594
PFAM: Thioesterase; KEGG: bsu:BSU03520 surfactin synthetase.
       0.515
Cpap_1947
Manually curated; PFAM: AMP-dependent synthetase and ligase; cobalamin B12-binding domain protein; KEGG: cce:Ccel_2386 amino acid adenylation domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.462
Cpap_2595
PFAM: MaoC domain protein dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: wbr:WGLp091 hypothetical protein.
       0.437
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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