STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2624KEGG: cce:Ccel_2517 hypothetical protein. (379 aa)    
Predicted Functional Partners:
Cpap_2623
PFAM: AMP-dependent synthetase and ligase; KEGG: cce:Ccel_2516 AMP-dependent synthetase and ligase.
       0.738
Cpap_2622
KEGG: cce:Ccel_2515 hypothetical protein.
       0.713
Cpap_2625
PFAM: phosphopantetheine-binding; KEGG: cce:Ccel_2518 phosphopantetheine-binding.
       0.708
Cpap_2626
PFAM: 5'-Nucleotidase domain-containing protein; metallophosphoesterase; KEGG: cce:Ccel_2519 5'-nucleotidase domain protein; Belongs to the 5'-nucleotidase family.
       0.630
Cpap_2621
KEGG: cce:Ccel_2514 hypothetical protein.
       0.599
Cpap_2627
PFAM: protein of unknown function DUF990; KEGG: cce:Ccel_2520 protein of unknown function DUF990.
       0.562
Cpap_2628
PFAM: protein of unknown function DUF990; KEGG: cce:Ccel_2521 protein of unknown function DUF990.
       0.562
Cpap_2629
KEGG: cce:Ccel_2522 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.562
Cpap_2616
KEGG: cce:Ccel_2510 protein of unknown function DUF201; manually curated; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp.
       0.437
Cpap_2617
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: cce:Ccel_2511 Orn/DAP/Arg decarboxylase 2.
       0.428
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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