STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2644PFAM: protein of unknown function DUF58; KEGG: cce:Ccel_2537 protein of unknown function DUF58. (360 aa)    
Predicted Functional Partners:
Cpap_2645
PFAM: ATPase associated with various cellular activities AAA_3; KEGG: cce:Ccel_2538 ATPase associated with various cellular activities AAA_3.
 
  
 0.932
Cpap_2643
KEGG: cce:Ccel_2536 hypothetical protein.
  
  
 0.851
Cpap_3195
KEGG: cce:Ccel_1711 transglutaminase domain protein; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein.
 
  
 0.715
Cpap_3197
PFAM: ATPase associated with various cellular activities AAA_3; KEGG: cce:Ccel_1709 ATPase associated with various cellular activities AAA_3.
 
  
 0.700
Cpap_2642
KEGG: cce:Ccel_2535 transcriptional regulator, TrmB.
       0.610
Cpap_2646
PFAM: protein of unknown function DUF81; KEGG: cce:Ccel_2539 hypothetical protein.
       0.580
Cpap_2647
PFAM: protein of unknown function DUF81; KEGG: cce:Ccel_2540 permease.
       0.524
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.470
Cpap_2314
KEGG: cce:Ccel_0213 hypothetical protein.
  
     0.423
Cpap_0250
PFAM: cellulosome anchoring protein cohesin region; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: cce:Ccel_0728 cellulosome anchoring protein cohesin region.
 
  
 0.413
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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