STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2656PFAM: Peptidase M23; KEGG: cce:Ccel_2548 peptidase M23. (297 aa)    
Predicted Functional Partners:
Cpap_2655
PFAM: peptidase M50; KEGG: cce:Ccel_2547 peptidase M50.
       0.848
Cpap_0626
CheC, inhibitor of MCP methylation / FliN fusion protein; KEGG: cce:Ccel_2038 flagellar motor switch protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein.
   
   0.778
Cpap_1447
PFAM: Peptidase M23; KEGG: eat:EAT1b_2566 peptidase M23.
  
     0.772
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
  
    0.577
Cpap_0117
Peptidoglycan glycosyltransferase; KEGG: cce:Ccel_2876 glycosyl transferase family 51; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.
  
   
 0.574
Cpap_2659
TIGRFAM: septum site-determining protein MinD; KEGG: cce:Ccel_2558 septum site-determining protein MinD.
       0.537
Cpap_2657
PFAM: MGS domain protein; KEGG: cce:Ccel_2556 MGS domain protein.
       0.507
Cpap_2653
KEGG: cce:Ccel_2545 glutamate synthase (NADPH), homotetrameric; TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.492
Cpap_2654
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: cce:Ccel_2546 ferredoxin-NADP(+) reductase subunit alpha.
       0.492
Cpap_2661
TIGRFAM: penicillin-binding protein 2; KEGG: cce:Ccel_2560 penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
 
   
 0.446
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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