STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2678PFAM: phosphopantetheine-binding; KEGG: cce:Ccel_2375 hypothetical protein. (84 aa)    
Predicted Functional Partners:
Cpap_2679
KEGG: cce:Ccel_2376 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase; phosphopantetheine-binding.
       0.773
Cpap_2680
KEGG: cce:Ccel_2377 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase; KR domain protein; phosphopantetheine-binding.
       0.773
Cpap_2681
KEGG: cce:Ccel_2380 malonyl CoA-acyl carrier protein transacylase.
       0.727
Cpap_2682
KEGG: ckr:CKR_1607 hypothetical protein; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding.
       0.727
Cpap_2683
KEGG: cbe:Cbei_0250 amino acid adenylation domain-containing protein; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Non-ribosomal peptide synthetase.
       0.672
Cpap_2684
Amino acid adenylation domain protein; KEGG: bbe:BBR47_28920 linear pentadecapeptide gramicidin synthetase LgrA; TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding.
       0.618
Cpap_2685
PFAM: beta-lactamase; KEGG: clj:CLJU_c35230 putative beta-lactamase.
       0.618
Cpap_2677
PFAM: glycosyltransferase 36; glycosyltransferase 36 associated; carbohydrate binding; KEGG: cce:Ccel_2577 putative carbohydrate binding.
       0.483
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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