STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2698PFAM: sugar isomerase (SIS); KEGG: cag:Cagg_0827 sugar isomerase (SIS). (183 aa)    
Predicted Functional Partners:
Cpap_2699
PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: dal:Dalk_1697 GHMP kinase.
 
 
 0.992
Cpap_2700
TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: cag:Cagg_0789 histidinol-phosphate phosphatase family protein.
 
 
0.976
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
    
 
 0.809
Cpap_2697
PFAM: glycosyl transferase family 2; KEGG: pay:PAU_02127 putative beta1,3-glucosyltransferase.
   
 
 0.712
Cpap_0626
CheC, inhibitor of MCP methylation / FliN fusion protein; KEGG: cce:Ccel_2038 flagellar motor switch protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein.
    
 
 0.691
Cpap_2696
TIGRFAM: galactose-1-phosphate uridylyltransferase; KEGG: csc:Csac_1510 galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein.
       0.612
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.587
Cpap_0637
PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: cce:Ccel_2049 flagellar assembly protein FliH.
   
   0.581
Cpap_0010
Manually curated; KEGG: cpi:Cpin_5290 erythronolide synthase, 6-methylsalicylic acid synthase; PFAM: Beta-ketoacyl synthase; KR domain protein; phosphopantetheine-binding.
   
 
 0.547
Cpap_0612
PFAM: CheC domain protein; KEGG: cce:Ccel_2025 CheC, inhibitor of MCP methylation.
    
 
 0.547
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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