STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2737KEGG: ckr:CKR_1585 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase. (260 aa)    
Predicted Functional Partners:
Cpap_2738
PFAM: transport system permease protein; KEGG: ckr:CKR_1584 hypothetical protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.991
Cpap_2739
PFAM: periplasmic binding protein; KEGG: mta:Moth_1419 periplasmic binding protein.
 
 0.986
Cpap_2744
PFAM: periplasmic binding protein; KEGG: mta:Moth_1419 periplasmic binding protein.
 
 0.982
Cpap_3489
PFAM: transport system permease protein; KEGG: det:DET1175 iron ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.968
Cpap_3823
PFAM: transport system permease protein; KEGG: lsp:Bsph_0134 iron(III) dicitrate transport system permease protein FecD; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.958
Cpap_2503
PFAM: transport system permease protein; KEGG: cce:Ccel_3203 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.957
Cpap_3488
PFAM: periplasmic binding protein; KEGG: dhd:Dhaf_0343 periplasmic binding protein.
 
 0.931
Cpap_2502
PFAM: periplasmic binding protein; KEGG: cce:Ccel_3204 periplasmic binding protein.
 
 0.912
Cpap_2743
PFAM: Methyltransferase type 11; KEGG: swo:Swol_1688 methyltransferase.
 
     0.887
Cpap_2740
KEGG: clj:CLJU_c17220 putative ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.875
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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