STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2743PFAM: Methyltransferase type 11; KEGG: swo:Swol_1688 methyltransferase. (209 aa)    
Predicted Functional Partners:
Cpap_4106
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding; KEGG: cce:Ccel_2331 amino acid adenylation domain protein; SMART: Polyketide synthase/Fatty acid synthase, KR.
    
 0.933
Cpap_2739
PFAM: periplasmic binding protein; KEGG: mta:Moth_1419 periplasmic binding protein.
 
 
   0.921
Cpap_2744
PFAM: periplasmic binding protein; KEGG: mta:Moth_1419 periplasmic binding protein.
 
 
   0.911
Cpap_2737
KEGG: ckr:CKR_1585 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.887
Cpap_0003
6-deoxyerythronolide-B synthase; Manually curated; KEGG: bbe:BBR47_39870 putative mixed polyketide synthase/non-ribosomal peptide synthetase; PFAM: Beta-ketoacyl synthase; phosphopantetheine-binding.
   
 0.877
Cpap_3704
PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KEGG: cce:Ccel_0864 amino acid adenylation domain protein.
   
 0.877
Cpap_3716
KEGG: cce:Ccel_0862 beta-ketoacyl synthase; PFAM: KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding.
   
 0.877
Cpap_0281
Hypothetical protein; KEGG: cce:Ccel_0862 beta-ketoacyl synthase.
    
 0.871
Cpap_2740
KEGG: clj:CLJU_c17220 putative ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.869
Cpap_2741
PFAM: cobalamin synthesis protein P47K; KEGG: aoe:Clos_0221 hypothetical protein.
 
     0.852
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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