STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2746PFAM: cytochrome c assembly protein; KEGG: dap:Dacet_0333 cytochrome c assembly protein. (633 aa)    
Predicted Functional Partners:
Cpap_2747
PFAM: WD40-like beta Propeller containing protein; KEGG: bth:BT_4426 hypothetical protein.
 
     0.874
Cpap_2748
Ricin B lectin; KEGG: caa:Caka_0968 surface layer protein; PFAM: Ricin B lectin; Dockerin type 1; SMART: Ricin B lectin.
 
  
 0.763
Cpap_3758
TIGRFAM: redox-active disulfide protein 2; KEGG: cce:Ccel_1067 redox-active disulfide protein 2.
  
  
 0.711
Cpap_3316
KEGG: cce:Ccel_1244 hypothetical protein; manually curated; PFAM: glutaredoxin 2.
 
   
 0.461
Cpap_1160
KEGG: cpy:Cphy_1688 two component regulator propeller domain-containing protein.
  
     0.458
Cpap_3931
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: cce:Ccel_1164 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain.
     
 0.441
Cpap_2096
KEGG: cce:Ccel_0016 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain.
     
 0.432
Cpap_1229
PFAM: Dockerin type 1; KEGG: cce:Ccel_1655 cellulosome protein dockerin type I.
  
  
 0.429
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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