STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2785PFAM: Carbohydrate kinase, FGGY-like; KEGG: cce:Ccel_3431 xylulokinase; Belongs to the FGGY kinase family. (518 aa)    
Predicted Functional Partners:
xylA
TIGRFAM: xylose isomerase; KEGG: cce:Ccel_3429 xylose isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel; Belongs to the xylose isomerase family.
 
 
 0.840
Cpap_1843
TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: cce:Ccel_1537 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.813
Cpap_2783
PFAM: class II aldolase/adducin family protein; KEGG: tvo:TVN1450 L-fuculose-phosphate aldolase.
  
 
 0.778
Cpap_3545
PFAM: Carbohydrate kinase, FGGY-like; KEGG: cce:Ccel_1006 carbohydrate kinase FGGY; Belongs to the FGGY kinase family.
  
  
 
0.707
Cpap_1427
KEGG: cce:Ccel_3467 L-ribulose-5-phosphate 4-epimerase; TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein.
  
 
 0.702
Cpap_1992
D-lyxose ketol-isomerase; KEGG: cce:Ccel_0320 YdaE.
    
  0.663
Cpap_0010
Manually curated; KEGG: cpi:Cpin_5290 erythronolide synthase, 6-methylsalicylic acid synthase; PFAM: Beta-ketoacyl synthase; KR domain protein; phosphopantetheine-binding.
  
 
 0.622
Cpap_4071
KEGG: bmq:BMQ_3647 hypothetical protein.
  
  
 0.606
Cpap_2784
Transcriptional antiterminator, BglG; KEGG: bld:BLi04090 LicR.
  
  
 0.581
Cpap_3773
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: cce:Ccel_3224 alcohol dehydrogenase GroES domain protein.
 
 
 0.516
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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