STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2827PFAM: beta-lactamase; KEGG: mba:Mbar_A1202 beta-lactamase class C and other pencillin-binding proteins. (325 aa)    
Predicted Functional Partners:
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.721
Cpap_2828
PFAM: Uncharacterised protein family UPF0066; KEGG: ckr:CKR_0280 hypothetical protein.
 
     0.659
Cpap_3692
KEGG: cce:Ccel_2638 transcriptional regulator, MerR family; PFAM: transcription activator effector binding; regulatory protein MerR; SMART: transcription activator effector binding; regulatory protein MerR.
  
     0.535
Cpap_2829
PFAM: GCN5-related N-acetyltransferase; KEGG: bmq:BMQ_1628 acetyltransferase, GNAT family.
 
     0.516
Cpap_4106
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding; KEGG: cce:Ccel_2331 amino acid adenylation domain protein; SMART: Polyketide synthase/Fatty acid synthase, KR.
  
  
 0.504
Cpap_0010
Manually curated; KEGG: cpi:Cpin_5290 erythronolide synthase, 6-methylsalicylic acid synthase; PFAM: Beta-ketoacyl synthase; KR domain protein; phosphopantetheine-binding.
  
  
 0.478
Cpap_1330
PFAM: Radical SAM domain protein; KEGG: cpy:Cphy_0183 radical SAM domain-containing protein.
  
     0.467
Cpap_2826
KEGG: sha:SH2317 hypothetical protein.
       0.465
Cpap_1111
SMART: regulatory protein MarR; KEGG: swo:Swol_0283 hypothetical protein.
  
     0.432
Cpap_2825
PFAM: Protein of unknown function DUF2089; KEGG: mba:Mbar_A0863 hypothetical protein.
       0.426
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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