STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2828PFAM: Uncharacterised protein family UPF0066; KEGG: ckr:CKR_0280 hypothetical protein. (158 aa)    
Predicted Functional Partners:
Cpap_2829
PFAM: GCN5-related N-acetyltransferase; KEGG: bmq:BMQ_1628 acetyltransferase, GNAT family.
 
     0.798
Cpap_2827
PFAM: beta-lactamase; KEGG: mba:Mbar_A1202 beta-lactamase class C and other pencillin-binding proteins.
 
     0.659
Cpap_1792
PFAM: Uncharacterised conserved protein UCP021328; KEGG: lba:Lebu_1283 hypothetical protein.
  
     0.597
Cpap_3692
KEGG: cce:Ccel_2638 transcriptional regulator, MerR family; PFAM: transcription activator effector binding; regulatory protein MerR; SMART: transcription activator effector binding; regulatory protein MerR.
 
     0.573
Cpap_4237
KEGG: cce:Ccel_2230 hypothetical protein.
  
     0.515
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
    
  0.513
Cpap_2368
Regulatory protein MerR; KEGG: cbi:CLJ_B0776 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR.
  
     0.478
Cpap_1916
PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cce:Ccel_0261 CMP/dCMP deaminase zinc-binding.
   
 
  0.466
Cpap_2370
PFAM: ABC-2 type transporter; KEGG: cbb:CLD_0040 putative drug resistance ABC-2 type transporter, permease protein.
  
     0.440
Cpap_3487
PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: cdl:CDR20291_0172 hypothetical protein.
    
  0.434
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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