STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2855Glucuronoarabinoxylan endo-1,4-beta-xylanase; PFAM: Carbohydrate binding family 6; Dockerin type 1; glycoside hydrolase family 30; KEGG: cce:Ccel_1242 carbohydrate binding family 6; SMART: cellulose binding type IV. (628 aa)    
Predicted Functional Partners:
Cpap_0261
PFAM: glycoside hydrolase family 5; Dockerin type 1; KEGG: cce:Ccel_0740 glycoside hydrolase family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 
 0.785
Cpap_3320
PFAM: Dockerin type 1; KEGG: cth:Cthe_0246 carbohydrate-binding family 6 protein.
  
  
 0.785
Cpap_3332
PFAM: glycoside hydrolase family 43; KEGG: cce:Ccel_1257 glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.781
Cpap_0962
PFAM: Dockerin type 1; KEGG: cce:Ccel_0417 cellulosome protein dockerin type I.
  
   
 0.767
Cpap_0251
PFAM: glycoside hydrolase family 48; Dockerin type 1; KEGG: cce:Ccel_0729 glycoside hydrolase family 48.
  
  
  0.725
Cpap_3319
PFAM: Pectinesterase; Dockerin type 1; KEGG: cce:Ccel_1246 pectinesterase.
  
   
 0.674
Cpap_2233
PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; KEGG: cce:Ccel_0154 glycoside hydrolase family 2 TIM barrel.
  
 
 0.669
Cpap_4240
PFAM: glycoside hydrolase family 9; KEGG: cce:Ccel_2226 glycoside hydrolase family 9.
  
  
  0.662
Cpap_2860
Xylan 1,4-beta-xylosidase; KEGG: pru:PRU_2063 family 43 glycosyl hydrolase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.644
Cpap_2854
PFAM: extracellular solute-binding protein family 1; KEGG: dth:DICTH_0038 polysaccharide ABC transporter substrate-binding protein.
       0.566
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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