STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2865Hypothetical protein; KEGG: swo:Swol_1001 superfamily II DNA/RNA helicase. (92 aa)    
Predicted Functional Partners:
Cpap_1644
SMART: helicase c2; DEAD-like helicase; KEGG: cce:Ccel_0660 DEAD_2 domain protein.
   
 0.988
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.985
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.985
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
  0.985
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.982
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.929
Cpap_2034
PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: cce:Ccel_0365 ATP dependent DNA ligase.
   
 
 0.867
Cpap_0195
SNF2-related protein; KEGG: npu:Npun_F6355 helicase domain-containing protein; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.
   
 0.863
Cpap_1417
KEGG: cce:Ccel_3458 SNF2-related protein; PFAM: SNF2 helicase associated domain protein; helicase domain protein; SNF2-related protein; SMART: DEAD-like helicase; helicase domain protein; PMZ-type Zinc finger domain protein.
   
 0.852
Cpap_0684
PFAM: histidine triad (HIT) protein; KEGG: cce:Ccel_2095 histidine triad (HIT) protein.
  
 
  0.833
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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