STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2895Multi-sensor signal transduction histidine kinase; KEGG: cce:Ccel_1983 putative sensor with HAMP domain; PFAM: histidine kinase internal region; Cache domain protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein. (597 aa)    
Predicted Functional Partners:
Cpap_2896
KEGG: cce:Ccel_1982 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; Helix-turn-helix, AraC domain.
 
 
 0.946
Cpap_2894
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cce:Ccel_1984 periplasmic binding protein/LacI transcriptional regulator.
 
   0.859
Cpap_3693
Two component transcriptional regulator, LytTR family; KEGG: cbb:CLD_3504 DNA-binding response regulator; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver.
  
 
 0.810
Cpap_4174
KEGG: cce:Ccel_2270 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: LytTr DNA-binding region; response regulator receiver.
  
 
 0.809
Cpap_3552
KEGG: cce:Ccel_0995 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; Helix-turn-helix, AraC domain.
  
 
 0.796
Cpap_3934
KEGG: cce:Ccel_1167 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; LytTr DNA-binding region.
  
 
 0.789
Cpap_2226
KEGG: cce:Ccel_0147 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver.
  
 
 0.788
Cpap_2228
KEGG: cce:Ccel_0149 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; Helix-turn-helix, AraC domain.
  
 
 0.787
Cpap_2292
KEGG: cce:Ccel_0198 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; Helix-turn-helix, AraC domain.
  
 
 0.780
Cpap_3301
KEGG: cce:Ccel_1228 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver.
  
 
 0.751
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.