STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2919PFAM: lipolytic protein G-D-S-L family; Dockerin type 1; KEGG: rmr:Rmar_2643 lipolytic protein G-D-S-L family. (484 aa)    
Predicted Functional Partners:
Cpap_1636
Hypothetical protein; Manually curated; KEGG: ttu:TERTU_4677 hypothetical protein.
  
 
  0.779
Cpap_3307
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; Dockerin type 1; KEGG: cce:Ccel_1235 carbohydrate binding family 6; SMART: cellulose binding type IV; Belongs to the glycosyl hydrolase 43 family.
  
  
  0.712
Cpap_2846
PFAM: glycoside hydrolase family 5; Dockerin type 1; KEGG: cce:Ccel_0840 glycoside hydrolase family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
0.618
Cpap_3320
PFAM: Dockerin type 1; KEGG: cth:Cthe_0246 carbohydrate-binding family 6 protein.
  
 0.595
Cpap_1159
KEGG: cja:CJA_3763 endo-1,4-beta-xylanase, esterase, xyn11A; PFAM: glycoside hydrolase family 11; polysaccharide deacetylase; Carbohydrate binding family 6; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.591
Cpap_2220
Alpha-glucuronidase; KEGG: cce:Ccel_0141 glycosyl hydrolase 67 middle domain protein; PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; Belongs to the glycosyl hydrolase 67 family.
 
     0.577
Cpap_0589
Xylan 1,4-beta-xylosidase; KEGG: cce:Ccel_2614 glycoside hydrolase family 43; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
  
  
  0.567
Cpap_0764
Alpha-L-fucosidase; KEGG: gym:GYMC10_5610 alpha-L-fucosidase.
  
 
  0.558
Cpap_1157
KEGG: cce:Ccel_1232 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV.
  
     0.532
Cpap_4043
PFAM: Dockerin type 1; KEGG: cce:Ccel_1207 cellulosome protein dockerin type I.
  
     0.532
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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