STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2957PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: vcj:VCD_001373 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (357 aa)    
Predicted Functional Partners:
Cpap_3817
PFAM: NAD-dependent epimerase/dehydratase; KEGG: cce:Ccel_1091 NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.877
Cpap_2958
PFAM: glycosyl transferase family 2; KEGG: pay:PAU_02127 putative beta1,3-glucosyltransferase.
  
  
 0.782
Cpap_1216
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ach:Achl_0779 oxidoreductase domain protein.
 
 
 0.734
Cpap_0335
TIGRFAM: nucleotide sugar dehydrogenase; KEGG: cce:Ccel_2929 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.731
Cpap_1210
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: csc:Csac_0599 oxidoreductase domain-containing protein.
 
 
 0.721
Cpap_3791
PFAM: oxidoreductase domain protein; KEGG: tit:Thit_1751 oxidoreductase domain protein.
 
 
 0.684
fcl
NAD-dependent epimerase/dehydratase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
  
 
 0.679
Cpap_1211
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: gym:GYMC10_1210 oxidoreductase domain protein.
 
 
 0.675
Cpap_3853
Nucleotide sugar dehydrogenase; KEGG: ftn:FTN_1426 UDP-glucose/GDP-mannose dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.673
Cpap_3818
PFAM: NAD-dependent epimerase/dehydratase; KEGG: tnp:Tnap_0421 NAD-dependent epimerase/dehydratase.
 
 
 0.671
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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