STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2983KEGG: cce:Ccel_1918 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (232 aa)    
Predicted Functional Partners:
Cpap_2982
KEGG: cce:Ccel_1919 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
 
  
 0.978
Cpap_2984
KEGG: cce:Ccel_1917 putative ABC transporter, peremase protein.
 
  
 0.974
Cpap_2981
PFAM: emp24/gp25L/p24 domain protein; KEGG: cce:Ccel_1920 hypothetical protein.
       0.717
Cpap_1703
Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
     
 0.669
Cpap_3929
KEGG: cce:Ccel_1160 hypothetical protein.
  
 0.587
Cpap_2538
Fagellar hook-basal body protein; KEGG: cce:Ccel_3101 protein of unknown function DUF1078 domain protein; TIGRFAM: fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein.
   
    0.571
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.546
Cpap_0819
KEGG: pjd:Pjdr2_3969 hypothetical protein.
  
 0.544
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.535
Cpap_0949
Hypothetical protein; Manually curated; KEGG: cce:Ccel_2157 hypothetical protein.
   
 0.524
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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