STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_2990PFAM: Sporulation stage III protein AF; KEGG: cce:Ccel_1911 hypothetical protein. (213 aa)    
Predicted Functional Partners:
Cpap_2988
TIGRFAM: stage III sporulation protein AD; KEGG: cce:Ccel_1913 stage III sporulation protein AD.
 
  
 0.998
Cpap_2989
KEGG: cce:Ccel_1912 stage III sporulation protein AE; TIGRFAM: stage III sporulation protein AE; PFAM: Sporulation stage III protein AE.
 
  
 0.992
Cpap_2991
KEGG: cce:Ccel_1910 stage III sporulation protein AG.
 
  
 0.977
Cpap_2986
KEGG: cce:Ccel_1915 stage III sporulation protein AB; TIGRFAM: stage III sporulation protein AB; PFAM: Sporulation stage III protein AB.
 
  
 0.954
Cpap_2987
TIGRFAM: stage III sporulation protein AC; KEGG: cce:Ccel_1914 stage III sporulation protein AC.
 
  
 0.948
Cpap_2992
KEGG: cce:Ccel_1909 hypothetical protein.
 
  
 0.942
Cpap_2985
KEGG: cce:Ccel_1916 stage III sporulation protein AA; TIGRFAM: stage III sporulation protein AA; SMART: AAA ATPase.
 
  
 0.831
Cpap_2995
PFAM: Protein of unknown function DUF2273; KEGG: cce:Ccel_1906 hypothetical protein.
 
     0.820
Cpap_0406
KEGG: cce:Ccel_0532 hypothetical protein.
  
    0.791
Cpap_3499
PFAM: Lipoprotein LpqB, GerMN domain; KEGG: cce:Ccel_1351 hypothetical protein.
  
    0.742
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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