Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cpap_3000KEGG: cce:Ccel_1901 hypothetical protein. (211 aa)    
Predicted Functional Partners:
dxs
Deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
      0.865
Cpap_3002
TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: cce:Ccel_1899 hemolysin A; SMART: RNA-binding S4 domain protein.
     
 0.720
argR
Arginine repressor, ArgR; Regulates arginine biosynthesis genes.
 
  
 0.650
Cpap_1987
PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: cce:Ccel_0314 ribosomal protein L7Ae/L30e/S12e/Gadd45.
  
     0.613
nadK
ATP-NAD/AcoX kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
       0.583
Cpap_1345
KEGG: cce:Ccel_0781 hypothetical protein.
  
     0.546
Cpap_3005
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
       0.543
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.506
Cpap_3006
SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: stage IV sporulation protein B; KEGG: cce:Ccel_1895 stage IV sporulation protein B; PFAM: peptidase S55 SpoIVB.
 
     0.501
Cpap_3148
TIGRFAM: stage II sporulation protein M; KEGG: cce:Ccel_1752 stage II sporulation protein M.
 
     0.499
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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