STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3002TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: cce:Ccel_1899 hemolysin A; SMART: RNA-binding S4 domain protein. (270 aa)    
Predicted Functional Partners:
dxs
Deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
  
    0.897
nadK
ATP-NAD/AcoX kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
  
  
 0.874
Cpap_3000
KEGG: cce:Ccel_1901 hypothetical protein.
     
 0.781
argR
Arginine repressor, ArgR; Regulates arginine biosynthesis genes.
  
    0.762
Cpap_3005
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
 
  
 0.738
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  
 0.644
Cpap_2999
PFAM: Polyprenyl synthetase; KEGG: cce:Ccel_1902 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
    0.613
pheT
KEGG: cce:Ccel_1443 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit.
  
  
 0.565
Cpap_3006
SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: stage IV sporulation protein B; KEGG: cce:Ccel_1895 stage IV sporulation protein B; PFAM: peptidase S55 SpoIVB.
       0.539
Cpap_3722
Hypothetical protein; KEGG: mif:Metin_0789 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
    0.537
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
Server load: high (96%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.