STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3068Type 3a cellulose-binding domain protein; KEGG: cpy:Cphy_2128 mannan endo-1,4-beta-mannosidase; manually curated; PFAM: type 3a cellulose-binding domain protein. (256 aa)    
Predicted Functional Partners:
Cpap_0251
PFAM: glycoside hydrolase family 48; Dockerin type 1; KEGG: cce:Ccel_0729 glycoside hydrolase family 48.
 
 
  0.905
Cpap_3849
PFAM: glycoside hydrolase family 5; Dockerin type 1; KEGG: cce:Ccel_1099 glycoside hydrolase family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 
  0.865
Cpap_0945
PFAM: lipolytic protein G-D-S-L family; KEGG: cce:Ccel_2162 lipolytic protein G-D-S-L family.
  
 
  0.860
Cpap_3071
KEGG: ate:Athe_0012 YD repeat protein; TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein.
 
 0.840
Cpap_1788
Mannan endo-1,4-beta-mannosidase; KEGG: cce:Ccel_1551 glycoside hydrolase family 26; PFAM: Dockerin type 1; Belongs to the glycosyl hydrolase 26 family.
 
     0.808
Cpap_0253
PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; Dockerin type 1; KEGG: cce:Ccel_0731 glycoside hydrolase family 9.
 
 
  0.798
Cpap_4043
PFAM: Dockerin type 1; KEGG: cce:Ccel_1207 cellulosome protein dockerin type I.
 
 
  0.787
Cpap_0257
PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; Dockerin type 1; KEGG: cce:Ccel_0735 glycoside hydrolase family 9.
 
 
  0.769
Cpap_0273
PFAM: glycoside hydrolase family 9; Dockerin type 1; KEGG: cce:Ccel_0753 glycoside hydrolase family 9; Belongs to the glycosyl hydrolase 9 (cellulase E) family.
 
 
   0.769
Cpap_3323
PFAM: glycoside hydrolase family 9; Dockerin type 1; KEGG: cce:Ccel_1249 glycoside hydrolase family 9.
 
 
   0.769
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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