STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3070PFAM: YD repeat-containing protein; KEGG: lmh:LMHCC_2776 YD repeat protein. (2262 aa)    
Predicted Functional Partners:
Cpap_3071
KEGG: ate:Athe_0012 YD repeat protein; TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein.
 
  
0.918
Cpap_0847
Cell division protein FtsK/SpoIIIE; KEGG: mfl:Mfl100 DNA translocase (stage III sporulation protein E); PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase.
  
 
 0.883
Cpap_1580
PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: cce:Ccel_0601 cell divisionFtsK/SpoIIIE.
  
 
 0.883
Cpap_0952
KEGG: slp:Slip_1811 fibronectin type III domain protein; PFAM: Kelch repeat type 1-containing protein; Fibronectin type III domain protein; SMART: Kelch repeat type 1-containing protein; Fibronectin type III domain protein.
 
 0.819
Cpap_1929
KEGG: bcg:BCG9842_B3621 hypothetical protein.
  
 0.788
Cpap_0023
KEGG: cce:Ccel_0508 hypothetical protein.
 
 
 0.770
Cpap_3068
Type 3a cellulose-binding domain protein; KEGG: cpy:Cphy_2128 mannan endo-1,4-beta-mannosidase; manually curated; PFAM: type 3a cellulose-binding domain protein.
 
 0.758
Cpap_0258
PFAM: Dockerin type 1; KEGG: cce:Ccel_0736 cellulosome protein dockerin type I.
  
 0.753
Cpap_0024
KEGG: cce:Ccel_0509 hypothetical protein.
 
  
 0.739
Cpap_0250
PFAM: cellulosome anchoring protein cohesin region; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: cce:Ccel_0728 cellulosome anchoring protein cohesin region.
 
    0.735
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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