STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3073KEGG: ptm:GSPATT00006888001 hypothetical protein. (159 aa)    
Predicted Functional Partners:
Cpap_3074
KEGG: amt:Amet_2198 hypothetical protein.
       0.744
Cpap_3072
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cwo:Cwoe_4565 transglycosylase domain protein.
       0.664
Cpap_3070
PFAM: YD repeat-containing protein; KEGG: lmh:LMHCC_2776 YD repeat protein.
       0.537
Cpap_3071
KEGG: ate:Athe_0012 YD repeat protein; TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein.
       0.537
Cpap_3069
KEGG: pyo:PY00138 hypothetical protein.
       0.462
Cpap_3068
Type 3a cellulose-binding domain protein; KEGG: cpy:Cphy_2128 mannan endo-1,4-beta-mannosidase; manually curated; PFAM: type 3a cellulose-binding domain protein.
       0.430
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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