STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3123KEGG: cce:Ccel_1777 CoA-binding domain protein; PFAM: CoA-binding domain protein; SMART: CoA-binding domain protein. (124 aa)    
Predicted Functional Partners:
Cpap_0740
PFAM: methylenetetrahydrofolate reductase; homocysteine S-methyltransferase; KEGG: cce:Ccel_2474 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein.
    
  0.798
Cpap_0296
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: cce:Ccel_3007 ferric uptake regulator, Fur family; Belongs to the Fur family.
  
    0.598
Cpap_2884
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: cce:Ccel_1995 ferric uptake regulator, Fur family; Belongs to the Fur family.
  
    0.598
Cpap_3122
PFAM: amine oxidase; KEGG: cce:Ccel_1778 amine oxidase.
       0.538
metAA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
    
  0.520
Cpap_0969
Quorum-sensing autoinducer 2 (AI-2), LuxS; KEGG: cbb:CLD_3205 putative endonuclease; PFAM: LuxS protein; Xylose isomerase domain-containing protein TIM barrel.
    
  0.514
Cpap_3121
Thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; manually curated; KEGG: cce:Ccel_1779 thioredoxin reductase; TIGRFAM: thioredoxin reductase.
 
   
 0.475
Cpap_3124
PFAM: Abortive infection protein; KEGG: cce:Ccel_1776 abortive infection protein.
       0.469
addB
ATP-dependent nuclease subunit B; ATP-dependent DNA helicase; Belongs to the helicase family. AddB/RexB type 1 subfamily.
       0.433
Cpap_2538
Fagellar hook-basal body protein; KEGG: cce:Ccel_3101 protein of unknown function DUF1078 domain protein; TIGRFAM: fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein.
    
   0.414
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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