STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3155KEGG: cce:Ccel_1745 hypothetical protein. (209 aa)    
Predicted Functional Partners:
Cpap_3156
Manually curated; TIGRFAM: sporulation protein YtfJ; KEGG: cce:Ccel_1744 sporulation protein YtfJ; PFAM: Sporulation protein YtfJ.
  
    0.877
scpB
Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
       0.749
scpA
Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
       0.703
Cpap_3152
PFAM: peptidase M50; KEGG: cce:Ccel_1748 peptidase M50.
       0.585
Cpap_3157
KEGG: cce:Ccel_1743 pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; Belongs to the pseudouridine synthase RsuA family.
       0.541
Cpap_0121
PFAM: Sporulation protein YtfJ; KEGG: cce:Ccel_2872 hypothetical protein.
  
    0.476
Cpap_2047
PFAM: Sporulation protein YtfJ; KEGG: cce:Ccel_0378 hypothetical protein.
  
    0.476
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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