STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3178PFAM: protein of unknown function DUF711; KEGG: cce:Ccel_1722 hypothetical protein. (452 aa)    
Predicted Functional Partners:
Cpap_3177
PFAM: amino acid-binding ACT domain protein; KEGG: cce:Ccel_1723 hypothetical protein; Belongs to the UPF0237 family.
 
     0.960
Cpap_3179
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cce:Ccel_1721 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
       0.542
Cpap_3180
KEGG: cce:Ccel_1720 hypothetical protein.
       0.493
Cpap_3176
PFAM: Radical SAM domain protein; KEGG: cce:Ccel_1724 radical SAM domain protein.
       0.483
Cpap_3175
KEGG: cce:Ccel_1725 hypothetical protein.
       0.470
gatB
glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
  
    0.442
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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