STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3208KEGG: cce:Ccel_1698 hypothetical protein; Belongs to the UPF0342 family. (128 aa)    
Predicted Functional Partners:
Cpap_1949
KEGG: cce:Ccel_0277 fibronectin type III domain protein; PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein.
  
     0.731
Cpap_0250
PFAM: cellulosome anchoring protein cohesin region; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: cce:Ccel_0728 cellulosome anchoring protein cohesin region.
  
     0.717
Cpap_2105
KEGG: cce:Ccel_0024 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.
  
     0.696
miaB
RNA modification enzyme, MiaB family; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
     
 0.678
Cpap_1909
KEGG: cce:Ccel_0254 hypothetical protein.
  
     0.675
Cpap_1301
PFAM: protein of unknown function DUF402; KEGG: cce:Ccel_0817 protein of unknown function DUF402.
  
     0.670
Cpap_0939
PFAM: Carbohydrate binding family 25; KEGG: cce:Ccel_2169 carbohydrate-binding family 25 protein.
  
     0.668
Cpap_1138
PFAM: copper amine oxidase-like domain-containing protein; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: cce:Ccel_2335 copper amine oxidase domain protein.
  
     0.642
Cpap_3182
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_1718 copper amine oxidase domain protein.
  
     0.625
Cpap_2901
KEGG: cce:Ccel_1977 hypothetical protein.
  
     0.605
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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