STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3233PFAM: General secretory system II protein E domain protein; KEGG: hwa:HQ1594A hypothetical protein. (648 aa)    
Predicted Functional Partners:
Cpap_3022
Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cce:Ccel_1885 diguanylate cyclase with GAF sensor; SMART: GGDEF domain containing protein; GAF domain protein.
  
 0.747
Cpap_2669
KEGG: cce:Ccel_2569 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; PEP-utilising protein mobile region; Belongs to the pyruvate kinase family.
    
  0.678
Cpap_3231
KEGG: tga:TGAM_0495 signal peptidase I, S26B/S24 family; TIGRFAM: peptidase S26B, signal peptidase; PFAM: Peptidase S24/S26A/S26B, conserved region.
   
   0.565
Cpap_3478
PFAM: homocysteine S-methyltransferase; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: cth:Cthe_0645 methionine synthase (B12-dependent).
  
  
 0.564
Cpap_3232
KEGG: rlg:Rleg_3750 binding-protein-dependent transport systems inner membrane component.
       0.533
Cpap_3230
KEGG: vpo:Kpol_1018p107 hypothetical protein.
       0.406
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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