STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3254PFAM: VTC domain; KEGG: cth:Cthe_1407 hypothetical protein. (223 aa)    
Predicted Functional Partners:
Cpap_3255
KEGG: swo:Swol_2179 hypothetical protein.
 
    0.952
Cpap_3256
PFAM: Spore coat protein CotH; KEGG: cce:Ccel_0251 spore coat protein CotH.
 
     0.913
Cpap_3410
KEGG: cce:Ccel_1305 hypothetical protein.
 
    0.885
Cpap_1905
KEGG: cce:Ccel_0250 hypothetical protein.
 
    0.880
Cpap_1906
PFAM: Spore coat protein CotH; KEGG: cce:Ccel_0251 spore coat protein CotH.
 
     0.780
Cpap_3408
PFAM: Spore coat protein CotH; KEGG: cce:Ccel_1303 spore coat protein CotH.
 
     0.779
Cpap_3651
KEGG: cce:Ccel_1454 hypothetical protein.
    
 0.735
Cpap_3252
Two component transcriptional regulator, winged helix family; KEGG: bpu:BPUM_2916 response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver.
       0.496
Cpap_3253
Integral membrane sensor signal transduction histidine kinase; PFAM: histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: bpu:BPUM_2915 sensor histidine kinase; SMART: histidine kinase A domain protein.
       0.496
Cpap_1965
PFAM: MgtC/SapB transporter; KEGG: cce:Ccel_0293 MgtC/SapB transporter.
  
    0.479
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.