STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3273KEGG: bbe:BBR47_39890 putative polyketide synthase; PFAM: Beta-ketoacyl synthase; Methyltransferase type 12; phosphopantetheine-binding. (1420 aa)    
Predicted Functional Partners:
Cpap_0003
6-deoxyerythronolide-B synthase; Manually curated; KEGG: bbe:BBR47_39870 putative mixed polyketide synthase/non-ribosomal peptide synthetase; PFAM: Beta-ketoacyl synthase; phosphopantetheine-binding.
 
0.999
Cpap_0010
Manually curated; KEGG: cpi:Cpin_5290 erythronolide synthase, 6-methylsalicylic acid synthase; PFAM: Beta-ketoacyl synthase; KR domain protein; phosphopantetheine-binding.
 
0.999
Cpap_1009
PFAM: AMP-dependent synthetase and ligase; KEGG: ckr:CKR_1607 hypothetical protein.
 0.999
Cpap_1010
PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: ckr:CKR_1607 hypothetical protein.
 0.999
Cpap_1764
PFAM: Methyltransferase type 12; oxidoreductase domain protein; KEGG: slg:SLGD_01928 polyketide synthase.
 
0.999
Cpap_1765
KEGG: ckr:CKR_1405 hypothetical protein; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Thioesterase; Methyltransferase type 12; Non-ribosomal peptide synthetase.
0.999
Cpap_2684
Amino acid adenylation domain protein; KEGG: bbe:BBR47_28920 linear pentadecapeptide gramicidin synthetase LgrA; TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding.
 0.999
Cpap_3241
Amino acid adenylation domain protein; KEGG: bbe:BBR47_29500 linear pentadecapeptide gramicidin synthetase LgrD; TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Belongs to the ATP-dependent AMP-binding enzyme family.
 0.999
Cpap_3242
KEGG: cby:CLM_0374 amino acid adenylation domain protein; TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Belongs to the ATP-dependent AMP-binding enzyme family.
 0.999
Cpap_3243
Amino acid adenylation domain protein; KEGG: cby:CLM_0375 bacitracin synthetase 1; TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; Methyltransferase type 12; Male sterility domain; Belongs to the ATP-dependent AMP-binding enzyme family.
 0.999
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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