STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3276PFAM: amidinotransferase; KEGG: mac:MA0792 arginine deiminase. (309 aa)    
Predicted Functional Partners:
arcA
Arginine deiminase; KEGG: cce:Ccel_3384 amidinotransferase; PFAM: amidinotransferase.
 
  
 0.938
Cpap_0348
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
  
 0.803
Cpap_0802
Agmatinase; KEGG: cce:Ccel_2434 agmatinase; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
     
 0.777
argG
PFAM: argininosuccinate synthase; manually curated; KEGG: cce:Ccel_1345 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
    
  0.754
Cpap_2202
Arginine decarboxylase; Manually curated; KEGG: sea:SeAg_B2134 lysine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase major region.
     
 0.682
Cpap_2234
PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: cce:Ccel_0155 Orn/Lys/Arg decarboxylase major region.
     
 0.682
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
     
 0.589
Cpap_0775
PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; KEGG: cce:Ccel_2448 FAD dependent oxidoreductase.
  
  
  0.566
Cpap_0794
KEGG: cth:Cthe_0198 glutamate synthase (NADPH) GltB2 subunit; PFAM: ferredoxin-dependent glutamate synthase.
   
 
  0.529
Cpap_1622
PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cce:Ccel_0635 aromatic amino acid beta-eliminating lyase/threonine aldolase.
    
  0.521
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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