STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3298PFAM: inner-membrane translocator; KEGG: cce:Ccel_1225 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (350 aa)    
Predicted Functional Partners:
Cpap_3297
KEGG: cce:Ccel_1224 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.991
Cpap_3296
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cce:Ccel_1223 periplasmic binding protein/LacI transcriptional regulator.
 0.982
Cpap_3299
PFAM: inner-membrane translocator; KEGG: cce:Ccel_1226 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 
0.957
Cpap_1713
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cce:Ccel_1642 periplasmic binding protein/LacI transcriptional regulator.
 0.921
Cpap_2892
KEGG: cce:Ccel_1986 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.911
Cpap_0906
KEGG: bpo:BP951000_2321 ABC type I periplasmic-binding protein (pbp1) family.
 
 0.908
Cpap_0904
KEGG: amt:Amet_0587 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.901
rbsA
ABC transporter related protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.895
Cpap_2894
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cce:Ccel_1984 periplasmic binding protein/LacI transcriptional regulator.
 
 0.883
Cpap_2807
ABC transporter related protein; KEGG: dth:DICTH_0297 ribose transport ATP-binding protein RbsA; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.876
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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