STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3305Glycoside hydrolase family 43; KEGG: cce:Ccel_1233 carbohydrate binding family 6; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV. (740 aa)    
Predicted Functional Partners:
Cpap_2860
Xylan 1,4-beta-xylosidase; KEGG: pru:PRU_2063 family 43 glycosyl hydrolase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.817
Cpap_0589
Xylan 1,4-beta-xylosidase; KEGG: cce:Ccel_2614 glycoside hydrolase family 43; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.793
Cpap_1636
Hypothetical protein; Manually curated; KEGG: ttu:TERTU_4677 hypothetical protein.
  
  
  0.782
Cpap_3320
PFAM: Dockerin type 1; KEGG: cth:Cthe_0246 carbohydrate-binding family 6 protein.
 
 
 0.765
Cpap_3306
KEGG: cce:Ccel_1234 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV.
 
  
 
0.736
Cpap_0764
Alpha-L-fucosidase; KEGG: gym:GYMC10_5610 alpha-L-fucosidase.
  
  
  0.724
Cpap_0945
PFAM: lipolytic protein G-D-S-L family; KEGG: cce:Ccel_2162 lipolytic protein G-D-S-L family.
 
  
 0.720
Cpap_1033
PFAM: protein of unknown function DUF1680; KEGG: pjd:Pjdr2_4282 protein of unknown function DUF1680.
 
   
 0.714
Cpap_2220
Alpha-glucuronidase; KEGG: cce:Ccel_0141 glycosyl hydrolase 67 middle domain protein; PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.699
Cpap_3330
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: cce:Ccel_1255 alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein.
 
 
 0.697
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.