STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpap_3306KEGG: cce:Ccel_1234 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV. (539 aa)    
Predicted Functional Partners:
Cpap_3307
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; Dockerin type 1; KEGG: cce:Ccel_1235 carbohydrate binding family 6; SMART: cellulose binding type IV; Belongs to the glycosyl hydrolase 43 family.
 
  
 
0.918
Cpap_3303
Glycoside hydrolase family 43; KEGG: cce:Ccel_1231 carbohydrate binding family 6; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV; Belongs to the glycosyl hydrolase 43 family.
 
  
 
0.866
Cpap_3242
KEGG: cby:CLM_0374 amino acid adenylation domain protein; TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.816
Cpap_2940
Alpha-N-arabinofuranosidase; PFAM: Carbohydrate binding family 6; glycoside hydrolase family 43; Dockerin type 1; KEGG: cce:Ccel_1229 carbohydrate binding family 6; SMART: cellulose binding type IV; Belongs to the glycosyl hydrolase 43 family.
  
  
 
0.806
Cpap_3330
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: cce:Ccel_1255 alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein.
  
  
  0.771
Cpap_4106
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; KR domain protein; Beta-ketoacyl synthase; phosphopantetheine-binding; KEGG: cce:Ccel_2331 amino acid adenylation domain protein; SMART: Polyketide synthase/Fatty acid synthase, KR.
  
  
 0.771
Cpap_0589
Xylan 1,4-beta-xylosidase; KEGG: cce:Ccel_2614 glycoside hydrolase family 43; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.745
Cpap_3305
Glycoside hydrolase family 43; KEGG: cce:Ccel_1233 carbohydrate binding family 6; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV.
 
  
 
0.736
Cpap_3320
PFAM: Dockerin type 1; KEGG: cth:Cthe_0246 carbohydrate-binding family 6 protein.
 
     0.735
Cpap_0962
PFAM: Dockerin type 1; KEGG: cce:Ccel_0417 cellulosome protein dockerin type I.
  
     0.716
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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